近年發表的代表性論文10篇：
(I) 微生物地理學研究
1.Shang Wang, Xiaobo Wang, Xingguo Han, Ye Deng*. Higher precipitation strengthens the microbial interactions in semi-arid grassland soils. Global Ecology and Biogeography. 2018, 27(5): 570-580
2.Ye Deng, Zhili He*, Jinbo Xiong, Hao Yu, Meiying Xu, Sarah E. Hobbie, Peter B. Reich, Christopher W. Schadt, Angela Kent, Elise Pendall, Matthew Wallenstein, Jizhong Zhou*, Elevated carbon dioxide accelerates the spatial turnover of soil microbial communities. Global Change Biology, 2016, 22(2):957-964
3.Yuguang Zhang*, Xiao Liu, Jing Cong, Hui Lu, Yuyu Sheng, Xiulei Wang, Diqiang Li, Xueduan Liu, Huaqun Yin, Jizhong Zhou, Ye Deng*. The microbially-mediated soil organic carbon loss under degenerative succession in an alpine meadow. Molecular Ecology, 2017, DOI: 10.1111/mec.14148
4.Jizhong Zhou*, Ye Deng*, Lina Shen, Chongqing Wen, Qingyun Yan, Daliang Ning, Yujia Qin, Kai Xue, Liyou Wu, Zhili He, James W. Voordeckers, Joy van Nostrand, Vanessa Buzzard, Sean T. Michaletz, Brian J. Enquist, Michael D. Weiser, Michael Kaspari, Robert Waide, Yunfeng Yang, James H. Brown. Temperature mediates continental-scale diversity of microbes in forest soils. Nature Communications, 2016, 12083 DOI: 10.1038/ncomms12083
5.Jizhong Zhou*, Ye Deng*, Lina Shen, Chongqing Wen, Qingyun Yan, Daliang Ning, Yujia Qin, Kai Xue, Liyou Wu, Zhili He, James W. Voordeckers, Joy van Nostrand, Vanessa Buzzard, Sean T. Michaletz, Brian J. Enquist, Michael D. Weiser, Michael Kaspari, Robert Waide, Yunfeng Yang, James H. Brown. Correspondence: Reply to “Analytical flaws in a continental-scale forest soil microbial diversity study”. Nature Communications, 2017, 8:15583.
(II) 生態模型與理論研究
6.Ye Deng, Ping Zhang, Yujia Qin, Qichao Tu, Yunfeng Yang, Zhili He, Christopher Warren Schadt, Jizhong Zhou*, Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation. Environmental Microbiology, 2016, 18(1): 205-218.
7.Kai Feng, Zhaojing Zhang, Weiwei Cai, Wenzong Liu, Meiying Xu, Huqun Yin, Aijie Wang, Zhili He, Ye Deng*. Biodiversity and species competition regulate the resilience of microbial biofilm community. Molecular Ecology, 2017,26(21): 6170-6182
(III) 宏基因組方法學和應用
8.Zhaojing Zhang, Yuanyuan Qu*, Shuzhen Li, Kai Feng, Shang Wang, Weiwei Ca, Yuting Liang, Hui Li, Meiying Xu, Huaqun Yin, Ye Deng*. Soil microbial quantification approaches coupling with relative abundances reflecting the changes of taxa in different locations. Scientific Reports, 2017, 7:4837.
9.Ziyan Wei, Kai Feng, Shuzhen Li, Yu Zhang, Hongrui Chen, Huaqun Yin, Meiying Xu, Ye Deng*. Exploring abundance, diversity and variation of a widespread antibiotic resistance gene in wastewater treatment plants. Environment International. 2018, 117: 186-195
10.Xiaoxia Zhang, Ruijie Zhang, Jusheng Gao, Xiucheng Wang, Fenliang Fan, Xiaotong Ma, Huaqun Yin, Caiwen Zhang, Kai Feng, Ye Deng*. Thirty-one years of Rice-Rice-Green Manure rotations shape the rhizosphere microbial community and enrich beneficial bacteria. Soil Biology & Biochemistry, 2017, 104: 208-217.
